Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX473228: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-319630' containing sample 'DAR5864'
2 ILLUMINA (Illumina HiSeq 2000) runs: 5.7M spots, 1.2G bases, 526.2Mb downloads

UUID: 4bfd10bb-32c9-4c59-86ee-1ca43b2f90c2

Design: Illumina sequencing of Staphylococcus aureus DAR5864 via random selection

Submitted by: Broad Institute (BI)

Study: MRSA USA100

PRJNA228403 • SRP038299 • All experiments • All runs

Sample: Generic sample from Staphylococcus aureus DAR5864

SAMN02403863 • SRS559581 • All experiments • All runs

Organism: Staphylococcus aureus DAR5864

Library:

Name: Pond-319630

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithReference

data_type: WGS

gssr_id: 471165.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:5CGMR

material_type: DNA:DNA Somatic

product_order: PDO-2701

product_part_number: P-WG-0004

project: G54704

research_project: RP-506

root_sample_id: SM-4ME4X

sample_id: SM-5CGMR

work_request: 39314

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2014-02-06 12:52:38.0	GAPipeline	RTA1.17.21.3	Sequencer Application 2.1.35.0

Runs: 2 runs, 5.7M spots, 1.2G bases, 526.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR1172641	2,874,633	580.7M	263.9Mb	2014-02-20
SRR1172662	2,863,714	578.5M	262.3Mb	2014-02-20

ID:: 653718

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity