Nanosalinia unclassified MAG from WGS of Philippine Karst Forest Soil - SRA

SRX15106415: Nanosalinia unclassified MAG from WGS of Philippine Karst Forest Soil
1 ILLUMINA (Illumina MiSeq) run: 26,485 spots, 106.7M bases, 25.8Mb downloads

Design: The soil samples were collected from surface soil in contact with limestone in three distinct areas of a region of karst forest located in the Municipality of Guiuan, Samar Province, Philippines. DNA extraction was performed using MP BIO FastDNA Spin Kit for Soil. The DNA samples were submitted to Apical Scientific for quality checking and next-generation shotgun metagenomic sequencing using an Illumina MiSeq instrument. The resulting raw reads were subjected to de novo assembly using MEGAHIT 1.2.9 (Li et al. 2015) and metagenomic binning using MetaBAT 2 (Kang et al. 2019). The MAGs were classified using GTDB-Tk 1.3.0 and GTDB Release 95 taxonomy database (Chaumeil et al. 2019).

Submitted by: University of the Philippines Manila

Study: CON-Kaigangan Project Sequencing Reads

PRJNA818731 • SRP365355 • All experiments • All runs

show Abstracthide Abstract

Taxonomic and functional diversity profiling of soil rhizosphere microbial communities in forests over limestone ecosystem. A collection of soil metagenomes isolated from four localities of Samar province, Philippines.

Sample:

SAMN27771324 • SRS12851652 • All experiments • All runs

Organism: Candidatus Nanohaloarchaea archaeon

Library:

Name: G3_Bin.7

Instrument: Illumina MiSeq

Strategy: WGS

Source: METAGENOMIC

Selection: RANDOM PCR

Layout: SINGLE

Runs: 1 run, 26,485 spots, 106.7M bases, 25.8Mb

Run	# of Spots	# of Bases	Size	Published
SRR19034882	26,485	106.7M	25.8Mb	2023-12-31

ID:: 21584265

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