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SRX24805105: Whole genome assembly of organophosphorus degrading Enterobacter cloacae AKC504, isolated from the agricultural field that used organophosphorus pesticide
1 ILLUMINA (Illumina NovaSeq 6000) run: 8.4M spots, 2.5G bases, 758.5Mb downloads

Design: Whole Genome sequencing of pesticide degrading bacteria in agricultural field
Submitted by: Jawaharlal Nehru University
Study: Organophosphorus degradation in pure cultures obtained from agricultural soil sample treated with pesticide.
show Abstracthide Abstract
Organophosphate pesticide, dichlorvos is one of the most widely used pesticides in developing countries for controlling domestic insects/pests. As dichlorvos is difficult to degrade without intervention, residues regarded as persistent organic pollutants threaten the environment, requiring more energy to remediate the same. Moreover, prolonged exposure to them exhibits genotoxic, neurological, and immunopathologic effects. Therefore, eco-friendly biodegradation is a useful intervention against excessive pesticide use and its environmental abuse. This study investigates the degrading potential and kinetics of microbial isolates against dichlorvos (2, 2- dichlorovinyl dimethyl phosphate). Isolation was primarily carried in the Minimal Salt Medium (broth) supplemented with pesticide at low concentrations. Pesticide-degrading bacterial isolates were purified on MSM agar supplemented with DDVP (dichlorovos) as a sole carbon source. Colonies were then processed to decipher identify first with morphological, cultural, biochemical and 16s rRNA sequencing. These bacterial strains were isolated from farmland exposed to dichlorvos for three consecutive farming sessions and successfully identified as Klebsiella pneumoniae and Enterobacter cloacae based on morphological, cultural, biochemical and 16S rRNA sequencing analysis.
Sample: Enterobacter cloacae isolated from soil from a cotton field
SAMN38756560 • SRS21520199 • All experiments • All runs
Library:
Name: cotton_non_rhizospheric_soil
Instrument: Illumina NovaSeq 6000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM PCR
Layout: PAIRED
Runs: 1 run, 8.4M spots, 2.5G bases, 758.5Mb
Run# of Spots# of BasesSizePublished
SRR292879828,352,1042.5G758.5Mb2024-12-15

ID:
33130443

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