Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

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SRX392405: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-287669' containing sample 'Staphylococcus aureus UCIM6116'
2 ILLUMINA (Illumina HiSeq 2000) runs: 3.1M spots, 620.3M bases, 382.3Mb downloads

UUID: d1d9f252-d986-480d-ad29-6555dd443456

Design: Illumina sequencing of Staphylococcus aureus UCIM6116 via random selection

Submitted by: Broad Institute (BI)

Study: MRSA Orange County

PRJNA224001 • SRP034406 • All experiments • All runs

Sample: Generic sample from Staphylococcus lugdunensis UCIM6116

SAMN02381740 • SRS515511 • All experiments • All runs

Organism: Staphylococcus lugdunensis UCIM6116

Library:

Name: Pond-287669

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithReference

data_type: WGS

gssr_id: 419511.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:4YW19

material_type: DNA:DNA Somatic

product_order: PDO-2265

product_part_number: P-WG-0004

project: G49953

research_project: RP-493

root_sample_id: SM-4T2M5

sample_id: SM-4YW19

work_request: 38774

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-11-18 11:59:18.0	GAPipeline	RTA1.17.21.3	Sequencer Application 2.1.35.0

Runs: 2 runs, 3.1M spots, 620.3M bases, 382.3Mb

Run	# of Spots	# of Bases	Size	Published
SRR1050456	1,510,672	305.2M	189Mb	2013-12-16
SRR1050457	1,560,105	315.1M	193.4Mb	2013-12-16

ID:: 563252

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