Whole genome sequence of Klebsiella pneumoniae - SRA

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SRX5820710: Whole genome sequence of Klebsiella pneumoniae
1 ILLUMINA (Illumina MiSeq) run: 746,958 spots, 357.1M bases, 233.4Mb downloads

Design: The QIAamp DNA minikit (Qiagen, Germany) was used to extract the total genomic DNA. A paired-end library (2 300 bp) was prepared using a Nextera XT DNA sample preparation kit, and whole-genome sequencing (WGS) was carried out on a MiSeq machine (Illumina, USA). The sequenced reads were quality trimmed using clc and de novo assembled using SPAdes version 3.11

Submitted by: National University Biomedical Research Institute

Study: Using Whole genome sequencing to identify antibiotic resistance genes and predict antimicrobial resistance phenotypes in MDR Klebsiella pneumon in Sudan

PRJNA526408 • SRP197747 • All experiments • All runs

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Reliable phenotypic antimicrobial susceptibility testing can be a challenge in clinical settings in Sudan. WGS is a promising approach to enhance current capabilities. To study diversity and resistance determinants and to predict and compare resistance patterns from WGS data of Klebsiella pneumon with phenotypic results from classical microbiological testing at a hospital in Sudan

Sample: Pathogen: clinical or host-associated sample from Klebsiella pneumoniae

SAMN11098619 • SRS4749356 • All experiments • All runs

Organism: Klebsiella pneumoniae

Library:

Name: M02621_0149_S16

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 746,958 spots, 357.1M bases, 233.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR9044171	746,958	357.1M	233.4Mb	2019-05-11

ID:: 7823548

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