Illumina sequencing of NTM isolates - SRA

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SRX5287785: Illumina sequencing of NTM isolates
1 ILLUMINA (Illumina MiSeq) run: 23.5M spots, 7.1G bases, 3.1Gb downloads

Design: Libraries were prepared using the Nextera XT library prep workflow (Illumina), and 2 150-nucleotide (nt) paired-end reads were generated on an Illumina MiSeq instrument. Quality trimming was executed using the sliding-window operation in TrimGalore (http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/) with default parameters. The final assembly was performed using the SPAdes (10) assembler (version 3.50) using kmers of 33, 55 and 77 nt. The assembly was subjected to binning with metabat and quality check was performed on the final resulting file with checkM.

Submitted by: Centre for Functional Diversity

Study: Mycobacterium sp. Genome sequencing and assembly

PRJNA508088 • SRP181900 • All experiments • All runs

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Isolation, identification and sequencing of environmental isolates related to genus Mycobacterium and that could be potentially perpetrators of nosocomial infections.

Sample:

SAMN10799738 • SRS4287298 • All experiments • All runs

Organism: Mycobacterium paragordonae

Library:

Name: My35AIII

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: Hybrid Selection

Layout: PAIRED

Runs: 1 run, 23.5M spots, 7.1G bases, 3.1Gb

Run	# of Spots	# of Bases	Size	Published
SRR8483011	23,486,361	7.1G	3.1Gb	2019-03-11

ID:: 7156655

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