U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX5516389: Whole genome shotgun sequencing of FSIS11918720 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1M spots, 494.5M bases, 226.7Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: United States Department of Agriculture, Food Safety and Inspection Service (USDA-FSIS)
Study: FSIS NARMS Escherichia coli
PRJNA292667 • SRP066916 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of foodborne pathogens as part of the US Department of Agriculture surveillance project for NARMS.
Sample:
SAMN11116158 • SRS4483861 • All experiments • All runs
Organism: Escherichia coli
Library:
Name: FSIS11918720 Nextera XT shotgun library
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for FSIS11918720.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.54
Runs: 1 run, 1M spots, 494.5M bases, 226.7Mb
Run# of Spots# of BasesSizePublished
SRR87231431,003,053494.5M226.7Mb2019-03-13

ID:
7445553

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...