U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

ERX2452435: Illumina HiSeq 2000 sequencing; qiita_ptid_1234:10333.Manaus.3762.1313508
1 ILLUMINA (Illumina HiSeq 2000) run: 222,484 spots, 27.4M bases, 12.8Mb downloads

Design: home and inhabitants samples from Manaus across socioeconomic gradient
Submitted by: University of California San Diego Microbiome Initiative (University of California San Diego Microbiome Init)
Study: Dominguez Sloan SAWesternization gradient
show Abstracthide Abstract
Westernization has propelled changes in urbanization and architecture, altering our exposure to the outdoor environment from that experienced during most of human evolution. These changes might affect the developmental exposure of infants to bacteria, immune development, and human microbiome diversity. Contemporary urban humans spend most of their time indoors, and little is known about the microbes associated with different designs of the built environment and their interaction with the human immune system. This study addresses the associations between factors associated with westernization including architectural design and the microbial biogeography of households across a gradient of urbanization in South America.
Sample: 10333.Manaus.3762.1313508; Dominguez Sloan SAWesternization gradient
SAMEA104707949 • ERS2309332 • All experiments • All runs
Library:
Name: 10333.Manaus.3762.1313508
Instrument: Illumina HiSeq 2000
Strategy: OTHER
Source: METAGENOMIC
Selection: PCR
Layout: SINGLE
Construction protocol: Illumina V4 515, 806bc
Experiment attributes: (show all 17 attributes...) (hide...)
barcode: TATGGTACCCAG
center_name: UPR NYU
center_project_name: Dominguez Sloan acculturation
experiment_center: UPR NYU
experiment_title: Dominguez Sloan socioeconomic gradient
linker: GT
pcr_primers: FWD:GTGCCAGCMGCCGCGGTAA; REV:GGACTACHVGGGTWTCTAAT
primer: GTGCCAGCMGCCGCGGTAA
run_center: CCME
run_date: 9/10/14
run_prefix: lane4_Undetermined_L004
runid: hiseq_ucd/140910_7001413_0162_AC4NMYANCXX
samp_size: .1,g
sample_center: UPR NYU
sequencing_meth: Sequencing by synthesis
target_gene: 16S rRNA
target_subfragment: V4
Runs: 1 run, 222,484 spots, 27.4M bases, 12.8Mb
Run# of Spots# of BasesSizePublished
ERR2432856222,48427.4M12.8Mb2019-03-21

ID:
7484860

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...