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SRX5688285: Whole genome shotgun sequencing of FSIS11919711 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.1M spots, 537M bases, 267.6Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: United States Department of Agriculture, Food Safety and Inspection Service (USDA-FSIS)
Study: FSIS NARMS Escherichia coli
PRJNA292667 • SRP066916 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of foodborne pathogens as part of the US Department of Agriculture surveillance project for NARMS.
Sample:
SAMN11419583 • SRS4628185 • All experiments • All runs
Organism: Escherichia coli
Library:
Name: FSIS11919711 Nextera XT shotgun library
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for FSIS11919711.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.54
Runs: 1 run, 1.1M spots, 537M bases, 267.6Mb
Run# of Spots# of BasesSizePublished
SRR89024411,092,367537M267.6Mb2019-04-15

ID:
7663224

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