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ERX3120839: NextSeq 500 paired end sequencing
1 ILLUMINA (NextSeq 500) run: 1.7M spots, 506.8M bases, 220.6Mb downloads

Submitted by: Institut Pasteur
Study: A core genome MLST scheme for assessing the global epidemiology and phylogenetic diversity of Leptospira
show Abstracthide Abstract
Leptospirosis, caused by pathogenic Leptospira strains, is an emerging bacterial zoonotic disease mostly affecting humans in tropical countries. Despite its public health importance, little is known about the strains that are circulating worldwide. In this work we describe a new typing tool based on genome sequence data that can discriminate all members of the Leptospira genus. We then examine the genetic diversity of Leptospira strains from different origins. This study will give us important informations for optimizing diagnostics and epidemiological surveillance.
Sample: Leptospira biflexa 201502612
SAMEA5168084 • ERS2975801 • All experiments • All runs
Library:
Name: Nextera XT
Instrument: NextSeq 500
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 1.7M spots, 506.8M bases, 220.6Mb
Run# of Spots# of BasesSizePublished
ERR30472531,717,348506.8M220.6Mb2019-04-18

ID:
7688852

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