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SRX5731557: Whole genome shotgun sequencing of FSIS11814328 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.2M spots, 579.8M bases, 339.1Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: United States Department of Agriculture, Food Safety and Inspection Service (USDA-FSIS)
Study: FSIS NARMS Escherichia coli
PRJNA292667 • SRP066916 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of foodborne pathogens as part of the US Department of Agriculture surveillance project for NARMS.
Sample:
SAMN11491769 • SRS4668949 • All experiments • All runs
Organism: Escherichia coli
Library:
Name: FSIS11814328 Nextera XT shotgun library
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for FSIS11814328.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.54
Runs: 1 run, 1.2M spots, 579.8M bases, 339.1Mb
Run# of Spots# of BasesSizePublished
SRR89516091,187,463579.8M339.1Mb2019-04-24

ID:
7715404

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