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SRX6628041: Whole genome shotgun sequencing of FSIS11923171 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 2.6M spots, 1G bases, 630.3Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: United States Department of Agriculture, Food Safety and Inspection Service (USDA-FSIS)
Study: FSIS NARMS Escherichia coli
PRJNA292667 • SRP066916 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of foodborne pathogens as part of the US Department of Agriculture surveillance project for NARMS.
Sample:
SAMN12401796 • SRS5190696 • All experiments • All runs
Organism: Escherichia coli
Library:
Name: FSIS11923171 Nextera XT shotgun library
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for FSIS11923171.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.54
Runs: 1 run, 2.6M spots, 1G bases, 630.3Mb
Run# of Spots# of BasesSizePublished
SRR98753272,594,5721G630.3Mb2019-07-31

ID:
8739741

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