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SRX7180811: Whole genome shotgun sequencing of Gardnerella sp. NR002
1 ILLUMINA (Illumina MiSeq) run: 1.3M spots, 570.3M bases, 388.7Mb downloads

Design: Nexterra XT Library prep, 2x250 paired end sequencing
Submitted by: University of Saskatchewan
Study: isolates from the human vaginal microbiome: genome sequencing and assembly
show Abstracthide Abstract
Gardnerella vaginalis is strongly associated with an imbalance in the vaginal microbiota called "Bacterial Vaginosis" (BV), which can lead to negative reproductive health outcomes such as pre-term birth and increased transmission of sexually transmitted infections. G. vaginalis, however, is also found in the vaginal microbiomes of women without symptoms of BV. The goal of the study is to identify the genomic differences that define four, previously described subgroups of Gardnerella vaginalis, which may account for its complicated association with vaginal symptoms.
Sample:
SAMN13328606 • SRS5687488 • All experiments • All runs
Library:
Name: NR002
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: size fractionation
Layout: PAIRED
Runs: 1 run, 1.3M spots, 570.3M bases, 388.7Mb
Run# of Spots# of BasesSizePublished
SRR104916981,285,226570.3M388.7Mb2020-12-19

ID:
9433545

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