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SRX7291033: GSM4210941: B_breve_C_2A; Bifidobacterium breve DSM 20213 = JCM 1192; RNA-Seq
1 BGISEQ (BGISEQ-500) run: 21.9M spots, 1.1G bases, 504.3Mb downloads

Submitted by: NCBI (GEO)
Study: Effect of linoleic acid on gut-derived Bifidobacterium breve DSM 20213: a transcriptomic approach
show Abstracthide Abstract
we investigated the effect of linoleic acid on the metabolism Bifidobacterium breve DSM 20213 by means of transcriptomic approach Overall design: Examination of samples grown in two different conditions: MRS-cys and MRS-cys-linoleic acid
Sample: B_breve_C_2A
SAMN13513295 • SRS5784193 • All experiments • All runs
Library:
Instrument: BGISEQ-500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: acidic-phenol/guanidine-isothiocyanate protocol 1)mRNA enrichment: Oligo dT Selection or rRNA depletion;2)RNA fragment and reverse transcription: Fragment the RNA and reverse transcription to double-strand cDNA (dscDNA) by N6 random primer;3)End repair, add A tailing and adaptor ligation:The synthesized cDNA was subjected to end-repair and then was 3' adenylated. Adaptors were ligated to the ends of these 3' adenylated cDNA fragments;4)PCR amplification:The ligation products were purified and many rounds of PCR amplification were performed to enrich the purified cDNA template using PCR primer;5)Denature and cyclization:Denature the PCR product by heat and the single strand DNA is cyclized by splint oligo and DNA ligase;6) Sequencing on BGISEQ-500 platform.
Experiment attributes:
GEO Accession: GSM4210941
Links:
Runs: 1 run, 21.9M spots, 1.1G bases, 504.3Mb
Run# of Spots# of BasesSizePublished
SRR1061176121,892,9631.1G504.3Mb2019-12-12

ID:
9567845

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