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SRX8160067: WGA of viral genome
1 ILLUMINA (Illumina MiSeq) run: 817,686 spots, 291.6M bases, 143.3Mb downloads

Design: Kapa stranded RNA library prep random hexamers; 2x300bp reads
Submitted by: School of Animal and Veterinary Sciences, The University of Adelaide
Study: Newcastle Disease Virus samples from outbreaks in 1951-2015 in West Java, Indonesia
show Abstracthide Abstract
The aim of this study is to provide full genome sequences from 6 NDV isolates in chicken from 1951 to 2015 in West Java, Indonesia. The pathotype of 6 isolates are virulent with a mean time to death of less than 60 hours (MDT). Avian Orthoavulavirus 1 NDV-9 ITA 1951-contigs 2 isolate belongs to genotype VI which is used as a challenge strain in vaccination trials. The remainder of the isolates belong to genotype VII, the dominant strain responsible for Newcastle Disease outbreaks in Indonesia.
Sample: Viral sample from Avian orthoavulavirus 1
SAMN14433354 • SRS6521836 • All experiments • All runs
Library:
Name: S2
Instrument: Illumina MiSeq
Strategy: WGA
Source: VIRAL RNA
Selection: RT-PCR
Layout: PAIRED
Runs: 1 run, 817,686 spots, 291.6M bases, 143.3Mb
Run# of Spots# of BasesSizePublished
SRR11593166817,686291.6M143.3Mb2020-05-11

ID:
10637300

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