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ERX3342053: Illumina HiSeq 2500 sequencing
1 ILLUMINA (Illumina HiSeq 2500) run: 25.4M spots, 1.3G bases, 252.3Mb downloads

Design: Streptomyces kanamyceticus RNA-Seq in CTT media
Submitted by: KAIST
Study: Transcriptome analysis of S. coelicolor and M. xanthus during co-culture
show Abstracthide Abstract
Streptomyces possess the genetic potential to produce diverse clinically important secondary metabolites. Many biosynthetic gene clusters (BGCs) is often activated by interaction with . One of the approaches to activate the silent BGCs is microbial co-culture which mimicking the natural ecological habitat of the microbes. Co-culture of Streptomyces coelicolor with Myxococcus xanthus which prey on a wide variety of microbes induces overproduction of actinorhodin by S. coelicolor. Here, we performed transcriptome analysis of M. xanthus and S. coelicolor during co-culture to elucidate the underlying mechanism how BGC for actinorhodin biosynthesis is activated. During the co-culture, S. coelicolor activated the actinorhodin biosynthesis and branched amino acid degradation to provide precursor, acetyl-CoA. Simultaneously, M. xanthus enhanced the production of siderophore myxochelin and the iron acquisition system. Myxochelin itself and chemical compound produced by M. xanthus had no effect, but the active chemical communication between S. coelicolor and M. xanthus was required for triggering actinorhodin overproduction of S. coelicolor. Iron level measurement and iron-rich co-culture revealed that M. xanthus mediated iron-depleted environment stimulated actinorhodin overproduction of S. coelicolor. This study utilized transcriptome analysis to determine the veiled mechanism, which stimulates the production of the secondary metabolite cluster during the co-culture.
Sample: Streptomyces kanamyceticus transcriptome analysis
SAMEA5597996 • ERS3402203 • All experiments • All runs
Library:
Name: Skan_CTT3
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: PCR
Layout: SINGLE
Construction protocol: Tru-Seq
Runs: 1 run, 25.4M spots, 1.3G bases, 252.3Mb
Run# of Spots# of BasesSizePublished
ERR331657925,351,7811.3G252.3Mb2020-04-18

ID:
10603835

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