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SRX9175719: RNA-Seq of Laminaria digitata: sporophytes at 10 and 20.5C
1 ILLUMINA (Illumina HiSeq 4000) run: 29.3M spots, 4.4G bases, 1.6Gb downloads

Design: RNA was enriched for polyA+ species and then converted to a cDNA sequencing library using a TruSeq Stranded mRNA kit (Illumina, San Diego, USA) according to the manufacturer's protocol. The cDNA was sequenced as 75 bp paired end libraries on an Illumina HiSeq 4000 at Cologne Center for Genomics, Cologne, Germany. Raw reads were quality trimmed with Trimmomatic (Bolger et al., 2014).
Submitted by: Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research
Study: Transcriptomic response of temperate and polar kelp to thermal stress
show Abstracthide Abstract
How thermal tolerance is inherited is still largely unknown in kelps and macroalgae. We investigated the thermal tolerance of juvenile Laminaria digitata sporophytes in the light of geographic origin of their female and male gametophyte parents. For this, we used unilinear gametophyte cultures isolated from Helgoland and Spitsbergen L. digitata, which are expected to differ slightly in their thermal characteristics. The first objective of this study was to identify potential genetically fixed differences in physiological and regulatory response to heat among sporophytes obtained from Helgoland and Spitsbergen gametophyte cultures. In a second step, we investigated potential effects of introgression of geographically distant genetic material on the regulation of metabolic pathways of reciprocal outcrosses among Helgoland and Spitsbergen populations.
Sample:
SAMN16242609 • SRS7413106 • All experiments • All runs
Library:
Name: 94125
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: Oligo-dT
Layout: PAIRED
Runs: 1 run, 29.3M spots, 4.4G bases, 1.6Gb
Run# of Spots# of BasesSizePublished
SRR1269602029,341,6614.4G1.6Gb2021-08-31

ID:
11951537

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