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SRX9915415: TR60-77
1 ILLUMINA (HiSeq X Ten) run: 2.8M spots, 839.6M bases, 334.9Mb downloads

Design: 1. Combination of bead-linked transposome and genomic DNA; 2. Tagmentation; 3. Reduced-cycle PCR amplifies sequencing ready DNA fragments and adds indexes and adapters; 137. Sequencing-ready fragments are washed and pooled.
Submitted by: Shantou University
Study: Raw reads and genome assemblies of 294 roseobacters isolated from 19 diatoms
show Abstracthide Abstract
Bacteria-microalgae interaction shapes carbon cycles in the pelagic ocean. The biochemical mechanisms underlying their interactions become increasingly known, but whether these ubiquitous interdomain interactions may drive bacterial evolution has not been illustrated. To test this hypothesis, we sought to determine the population structure of roseobacters colonizing the phycospheres of coexisting microalgal cells. A few environmental factors including nutrient availability, interactions with phages and phytoplankton are known to drive roseobacter population differentiation. To single out diatoms from other confounding factors that may drive roseobacter evolution, populations associated with diatoms sampled from a single seawater sample were analyzed. Nanopore sequences in PRJNA764816 Illumina sequences in PRJNA691705
Sample: The draft genome of Sulfitobacter geojensis TR60-77
SAMN17369637 • SRS8092645 • All experiments • All runs
Library:
Name: TR60-77
Instrument: HiSeq X Ten
Strategy: WGS
Source: GENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 2.8M spots, 839.6M bases, 334.9Mb
Run# of Spots# of BasesSizePublished
SRR135037082,798,608839.6M334.9Mb2021-01-22

ID:
12974910

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