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SRX462004: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Berta str. NY_BAC0900001692 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 571,147 spots, 249.3M bases, 128Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr Project: NY State Dept. of Health, Wadsworth Center
PRJNA183850 • SRP028607 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample: Pathogen bacterial, environmental sample from Salmonella enterica
SAMN01902333 • SRS551228 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Berta
Library:
Name: Salmonella enterica str. NY_BAC0900001692 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Berta str. NY_BAC0900001692.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.17.28
Runs: 1 run, 571,147 spots, 249.3M bases, 128Mb
Run# of Spots# of BasesSizePublished
SRR1158021571,147249.3M128Mb2014-02-03

ID:
642055

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