Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

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SRX332848: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Cerro str. NY_FSL S10-545 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 755,048 spots, 367.8M bases, 194.7Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: NY State Dept. of Health, Wadsworth Center

PRJNA183850 • SRP028607 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample: Pathogen bacterial, environmental sample from Salmonella enterica

SAMN01902428 • SRS468281 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Cerro

Library:

Name: Salmonella enterica str. CFSAN002915_01 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumia Nextera XT library created for Salmonella enterica str. CFSAN002915_01.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	3.2.1

Runs: 1 run, 755,048 spots, 367.8M bases, 194.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR949369	755,048	367.8M	194.7Mb	2013-08-08

ID:: 467866

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