Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

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SRX332975: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar str. NY_FSL P3-1550 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.4M spots, 592.7M bases, 318.4Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: NY State Dept. of Health, Wadsworth Center

PRJNA183850 • SRP028607 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample: Pathogen bacterial, environmental sample from Salmonella enterica

SAMN01902448 • SRS468394 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica

Library:

Name: Salmonella enterica str. CFSAN003156_01 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumia Nextera XT library created for Salmonella enterica subsp. enterica serovar str. NY_FSL P3-1550.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	3.2.1

Runs: 1 run, 1.4M spots, 592.7M bases, 318.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR949498	1,408,904	592.7M	318.4Mb	2013-08-08

ID:: 467993

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