U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX372183: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar str. NY_FSL S10-1823 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.5M spots, 697.6M bases, 403.9Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr Project: NY State Dept. of Health, Wadsworth Center
PRJNA183850 • SRP028607 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample: Pathogen bacterial, environmental sample from Salmonella enterica
SAMN01902501 • SRS497609 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica
Library:
Name: Salmonella enterica str. CFSAN002973_01 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar str. NY_FSL S10-1823.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.17.28
Runs: 1 run, 1.5M spots, 697.6M bases, 403.9Mb
Run# of Spots# of BasesSizePublished
SRR10231191,454,974697.6M403.9Mb2013-11-02

ID:
532299

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...