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SRX340265: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Reading str. IEH_NGS_SAL_00158 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 612,427 spots, 289.5M bases, 152.7Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr Project: US Food and Drug Administration
PRJNA186035 • SRP018785 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample: Pathogen sample from Salmonella enterica
SAMN01920943 • SRS473975 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica
Library:
Name: Salmonella enterica str. CFSAN002704_01 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Reading str. IEH_NGS_SAL_00158.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.17.28
Runs: 1 run, 612,427 spots, 289.5M bases, 152.7Mb
Run# of Spots# of BasesSizePublished
SRR958018612,427289.5M152.7Mb2013-08-27

ID:
478049

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