U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX2804065: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 652,252 spots, 263.1M bases, 168.4Mb downloads

External Id: EXT00259641
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: Foodborne Pathogen Survey
PRJNA192025 • SRP106964 • All experiments • All runs
show Abstracthide Abstract
Genome Sequencing Project
Sample: Environmental, food or other pathogen sample from Salmonella enterica subsp. enterica serovar Newport str. CFSAN000831
SAMN01938967 • SRS2184303 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Newport str. CFSAN000831
Library:
Name: Salmonella enterica subsp. enterica Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 652,252 spots, 263.1M bases, 168.4Mb
Run# of Spots# of BasesSizePublished
SRR5534482652,252263.1M168.4Mb2017-05-12

ID:
4038793

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...