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SRX11052913: GSM5354861: Dab2 KO clone set 3; Didelphis virginiana; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 61.2M spots, 9.2G bases, 3.5Gb downloads

Submitted by: NCBI (GEO)
Study: Cubilin-, Megalin- and Dab2-dependent transcription revealed by CRISPR/Cas9 knockout in kidney proximal tubule cells
show Abstracthide Abstract
The multiligand receptor megalin and its endocytic adaptor protein Dab2 play essential roles in maintaining the integrity of the apical endocytic pathway of proximal tubule cells, and have complex and poorly understood roles in the development of chronic kidney disease. Here we used RNASeq in CRISPR/Cas9 knockout technology in a well-differentiated cell culture model to identify PT-specific transcriptional changes that are directly consequent to the loss of megalin (Lrp2), cubilin (Cubn), or Dab2 (Dab2) expression. Overall design: CRISPR/Cas9 knockout Opossum Kidney (OK) cells cultured under orbital shear stress to enhance differentiation were subjected to RNASeq.
Sample: Dab2 KO clone set 3
SAMN19548264 • SRS9120682 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Cells were collected using Accutase (BD Biosciences) and RNA was extracted using the Ambion PureLink RNA mini kit (Thermo Fisher Scientific). RNA from three independent experiments was sequenced for each clone. Library preparation and RNA Seq was performed by the University of Pittsburgh School of Medicine Genomics Analysis Core
Experiment attributes:
GEO Accession: GSM5354861
Links:
Runs: 1 run, 61.2M spots, 9.2G bases, 3.5Gb
Run# of Spots# of BasesSizePublished
SRR1471577061,247,3619.2G3.5Gb2021-12-30

ID:
14707207

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