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SRX11588658: Whole genome sequencing of Bacteroides fragilis group isolates
1 OXFORD_NANOPORE (MinION) run: 12,571 spots, 77.4M bases, 66.9Mb downloads

Design: High molecular weight gDNA was extracted using phenol-chloroform extraction. ONT sequencing libraries were prepared using the Oxford Nanopore Ligation Sequencing and Native Barcode kits.
Submitted by: Washington University School of Medicine in St. Louis
Study: Bacteroides fragilis group isolates from human infections
show Abstracthide Abstract
This study includes genomes from 194 Bacteroides fragilis group isolates, including 174 isolates collected at the Barnes-Jewish Hospital in St. Louis, MO from 2018-2020, as well as 20 banked B. fragilis sensu stricto isolates enriched for carbapenem resistance. Genome sequences are used for phylogenomic studies to validate the accuracy of species identification tools commonly used in clinical settings. Furthermore, these genomes are used to identify species-specific genetic elements related to antibiotic resistance for comparison with phenotypic antibiotic resistance.
Sample:
SAMN20148214 • SRS9623163 • All experiments • All runs
Library:
Name: BFG_SL_ONT_IHMA_13
Instrument: MinION
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Runs: 1 run, 12,571 spots, 77.4M bases, 66.9Mb
Run# of Spots# of BasesSizePublished
SRR1528380512,57177.4M66.9Mb2021-12-17

ID:
15501427

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