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SRX13121329: Long-read genomic sequencing of Staphylococcus pseudintermedius from canine skin
1 OXFORD_NANOPORE (MinION) run: 69,810 spots, 232.7M bases, 193.7Mb downloads

Design: Rapid Barcoding Sequencing kit SQK-RBK004
Submitted by: Universitat Autonoma de Barcelona
Study: Pathogenesis of canine pyoderma - Whole genome sequencing of Staphylococcus pseudintermedius
show Abstracthide Abstract
The majority of canine pyodermas are caused by Staphylococcus pseudintermedius, which is part of the normal skin microbiota of the dog. The mechanisms that lead a commensal bacterium to transform itself into a pathogen have so far remained elusive to research. However, understanding the whole pathogenic process is of outmost importance to develop new treatment and prevention strategies. We hypothesized that comparative analysis of the complete genome of S. pseudintermedius strains isolated from healthy dogs and dogs with pyoderma could help to understand the pathogenesis of pyoderma.
Sample: BRACO perioral healthy D
SAMN21249938 • SRS11056086 • All experiments • All runs
Library:
Name: UABHSP159
Instrument: MinION
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Runs: 1 run, 69,810 spots, 232.7M bases, 193.7Mb
Run# of Spots# of BasesSizePublished
SRR1692923869,810232.7M193.7Mb2021-11-12

ID:
17862601

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