Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

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SRX371491: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Heidelberg str. AZ_TG68092 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.2M spots, 426M bases, 245.5Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: Arizona State Public Health Laboratory

PRJNA183847 • SRP028894 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample: Pathogen sample from Salmonella enterica

SAMN02261108 • SRS496996 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Heidelberg

Library:

Name: Salmonella enterica str. CFSAN005315_01 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Heidelberg str. AZ_TG68092.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.17.28

Runs: 1 run, 1.2M spots, 426M bases, 245.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR1021809	1,233,710	426M	245.5Mb	2013-10-30

ID:: 531362

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