Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

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SRX336189: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Newport str. AZ_TG68156 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.6M spots, 713.8M bases, 462.1Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: Arizona State Public Health Laboratory

PRJNA183847 • SRP028894 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample: Pathogen sample from Salmonella enterica

SAMN02261124 • SRS471190 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Newport

Library:

Name: Salmonella enterica str. CFSAN005331_01 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumia Nextera XT library created for Salmonella enterica subsp. enterica serovar Newport str. AZ_TG68156.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	3.2.1

Runs: 1 run, 1.6M spots, 713.8M bases, 462.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR953548	1,613,639	713.8M	462.1Mb	2013-08-19

ID:: 472891

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