Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

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SRX372904: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Saintpaul str. AZ_TG68292 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.4M spots, 521.1M bases, 287.1Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: Arizona State Public Health Laboratory

PRJNA183847 • SRP028894 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample: Pathogen sample from Salmonella enterica

SAMN02261158 • SRS498466 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Saintpaul

Library:

Name: Salmonella enterica str. CFSAN005365_01 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Saintpaul str. AZ_TG68292.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.17.28

Runs: 1 run, 1.4M spots, 521.1M bases, 287.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR1023859	1,373,942	521.1M	287.1Mb	2013-11-04

ID:: 533117

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