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SRX378357: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Montevideo str. AZ_TG68356 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.1M spots, 401.9M bases, 238.1Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr Project: Arizona State Public Health Laboratory
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample: Pathogen sample from Salmonella enterica
SAMN02261174 • SRS503153 • All experiments • All runs
Library:
Name: Salmonella enterica str. AZ_TG68356 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Montevideo str. AZ_TG68356.
Spot descriptor:
forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.17.28
Runs: 1 run, 1.1M spots, 401.9M bases, 238.1Mb
Run# of Spots# of BasesSizePublished
SRR10308421,073,591401.9M238.1Mb2013-11-18

ID:
540268

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