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SRX415298: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Braenderup str. CFSAN005399 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 589,635 spots, 282.3M bases, 163.7Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr Project: Arizona State Public Health Laboratory
PRJNA183847 • SRP028894 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample: Pathogen sample from Salmonella enterica
SAMN02298228 • SRS525160 • All experiments • All runs
Organism: Salmonella enterica
Library:
Name: Salmonella enterica str. CFSAN005399 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Braenderup str. CFSAN005399.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.17.28
Runs: 1 run, 589,635 spots, 282.3M bases, 163.7Mb
Run# of Spots# of BasesSizePublished
SRR1089536589,635282.3M163.7Mb2014-01-06

ID:
590750

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