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SRX391924: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Newington str. AZ_TG68499 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 728,368 spots, 340M bases, 184.4Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr Project: Arizona State Public Health Laboratory
PRJNA183847 • SRP028894 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample: Pathogen sample from Salmonella enterica
SAMN02314180 • SRS515142 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica
Library:
Name: Salmonella enterica str. AZ_TG68499 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Newington str. AZ_TG68499.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.17.28
Runs: 1 run, 728,368 spots, 340M bases, 184.4Mb
Run# of Spots# of BasesSizePublished
SRR1049696728,368340M184.4Mb2013-12-16

ID:
562678

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