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SRX512403: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Meleagridis str. NY-FSL-R6-0951 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 801,698 spots, 381M bases, 207.8Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr Project: NY State Dept. of Health, Wadsworth Center
PRJNA183850 • SRP028607 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN02664814 • SRS589726 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Meleagridis
Library:
Name: Salmonella enterica str. NY-FSL-R6-0951 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Meleagridis str. NY-FSL-R6-0951.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.42
Runs: 1 run, 801,698 spots, 381M bases, 207.8Mb
Run# of Spots# of BasesSizePublished
SRR1220715801,698381M207.8Mb2014-04-12

ID:
711896

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