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SRX513704: Methanosarcina mazei 1.H.A.2.6
1 ILLUMINA (Illumina HiSeq 2000) run: 3.2M spots, 635.2M bases, 441.1Mb downloads

Design: Nextera XT library prep with gDNA isolated from colony-purified cultures
Submitted by: (UIUC)
Study: Methanosarcina Genome sequencing and assembly
show Abstracthide Abstract
Methanogenic archaea are a genotypically and phenotypically diverse group that serve as key players in carbon cycling occurring in anaerobic environments. Comparative genomics of model methanogen strains have revealed a great deal of genetic variation among even the most closely related of sequenced methanogen genomes; however, the ecological relevance of this variation in natural environments is largely unknown. The goal of this study was to investigate how genomic and ecological diversity was partitioned within and between Methanosarcina mazei populations obtained from two different sediment environments in the Columbia River Estuary (Oregon, USA), which vary in geochemical parameters and methanogen community composition.
Sample:
SAMN02708979 • SRS590457 • All experiments • All runs
Library:
Name: L098-08-1
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
forward101  reverse

Runs: 1 run, 3.2M spots, 635.2M bases, 441.1Mb
Run# of Spots# of BasesSizePublished
SRR12255763,176,052635.2M441.1Mb2015-03-27

ID:
713197

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