U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX838858: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Enteritidis str. AZ-TG74584 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.2M spots, 569.3M bases, 330.3Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr Project: Arizona State Public Health Laboratory
PRJNA183847 • SRP028894 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN02894020 • SRS815594 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Enteritidis
Library:
Name: Salmonella enterica str. AZ-TG74584 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Enteritidis str. AZ-TG74584.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.54
Runs: 1 run, 1.2M spots, 569.3M bases, 330.3Mb
Run# of Spots# of BasesSizePublished
SRR17528871,209,604569.3M330.3Mb2015-01-12

ID:
1188657

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...