Whole genome shotgun sequencing of Listeria monocytogenes subsp. sero... - SRA

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SRX683041: Whole genome shotgun sequencing of Listeria monocytogenes subsp. serovar 4 str. MOD1_LS979 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.4M spots, 645.1M bases, 360.6Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA215355 • SRP028928 • All experiments • All runs

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Listeria monocytogenes Database: isolates from the Food and Drug Administration, Center for Food Safety and Applied Nutrition

Sample:

SAMN02990445 • SRS686522 • All experiments • All runs

Organism: Listeria monocytogenes

Library:

Name: Listeria monocytogenes str. MOD1_LS979 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Listeria monocytogenes subsp. serovar 4 str. MOD1_LS979.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.42

Runs: 1 run, 1.4M spots, 645.1M bases, 360.6Mb

Run	# of Spots	# of Bases	Size	Published
SRR1553779	1,428,730	645.1M	360.6Mb	2014-08-19

ID:: 955961

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