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ERX9520350: MinION sequencing
1 OXFORD_NANOPORE (MinION) run: 147,970 spots, 355.9M bases, 309.1Mb downloads

Submitted by: Quadram Institute Bioscience
Study: Long-read data for E. coli genomes harbouring ESC-R genes in plasmids.
show Abstracthide Abstract
The emergence and persistence of extended-spectrum cephalosporin resistance (ESC-R) is a major public health problem worldwide. This study aimed to generate long-read data for 20 ESC-R E. coli genomes, which are part of a large collection with short-read data (PRJEB50837 and PRJNA523640 [SAMN10985367]). This long-read data were used to confirm the localization of the ESC-R genes in plasmids or in the chromosome. All 20 genomes were sequenced using the MinION sequencing device (Oxford Nanopore Technologies). Note: raw reads were submitted for almost all genomes except for one genome (SAMEA110398701), where a filtered reads file was submitted.
Sample: 34646_S13
SAMEA110398696 • ERS12496719 • All experiments • All runs
Library:
Instrument: MinION
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Runs: 1 run, 147,970 spots, 355.9M bases, 309.1Mb
Run# of Spots# of BasesSizePublished
ERR9979373147,970355.9M309.1Mb2022-08-15

ID:
23879808

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