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SRX739171: Whole genome shotgun sequencing of Cronobacter str. CFSAN022316 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.4M spots, 581.8M bases, 314.2Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: Cronobacter GenomeTrakr Project: FDA-CFSAN
PRJNA258403 • SRP049009 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured Cronobacter species as part of the FDA's Center for Food Safety and Applied Nutrition (CFSAN) surveillance project for rapid detection of foodborne illness outbreaks.
Sample:
SAMN03135659 • SRS726935 • All experiments • All runs
Organism: Cronobacter sakazakii
Library:
Name: Cronobacter str. CFSAN022316 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Cronobacter str. CFSAN022316.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.54
Runs: 1 run, 1.4M spots, 581.8M bases, 314.2Mb
Run# of Spots# of BasesSizePublished
SRR16195961,391,055581.8M314.2Mb2014-10-23

ID:
1070009

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