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ERX10002565: Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Clostridium cellulovorans cultured in different carbon sources in exponential phase
1 ILLUMINA (Illumina HiSeq 2500) run: 8.9M spots, 2.7G bases, 860.9Mb downloads

Design: RNA-Seq of Clostridium cellulovorans cultured in different carbon sources in exponential phase
Submitted by: Qingdao Institute Of Bioenergy & Bioprocess Technology Chinese Academy Of Sciences (Qingdao Institute Of Bioenergy & Bioprocess Techno)
Study: RNA-Seq of Clostridium cellulovorans cultured in different carbon sources in exponential phase
show Abstracthide Abstract
When Clostridium cellulovorans cultured in different carbon sources respectively, with pH controlled at 7.0 in the fed-batch fermentation, the main product was butyrate. In order to understand the carbon and energy flux of Clostridium cellulovorans, comparative transcriptome in exponential phase was performed.
Sample: B3
SAMEA112129935 • ERS14239004 • All experiments • All runs
Library:
Name: B3_p
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: PAIRED
Construction protocol: Cell pellets from 50 ml culture were collected by centrifugation at -4 °C and 9,000 rpm (Hitachi CF16RXII, Qingdao, China) for 5 min. Afterwards, pellets were frozen in liquid nitrogen and stored at -80°C. Total RNA was extracted using the mirVana miRNA Isolation Kit (Ambion) following the manufacturer's protocol. RNA integrity was evaluated using the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA, USA). The samples with RNA Integrity Number (RIN) ≥ 7 were subjected to the subsequent analysis. Double stranded cDNA was generated using the SuperScript Double-Stranded cDNA synthesis kit (Invitrogen) according to the manufacturer's instructions.It was performed by Oebiotech (Shanghai, China). The libraries were constructed using TruSeq Stranded mRNA LTSample Prep Kit (Illumina, San Diego, CA, USA) according to the manufacturer's instructions. This part of experiment is carried out at Oebiotech (Shanghai, China).
Experiment attributes:
Experimental Factor: time: 96
Runs: 1 run, 8.9M spots, 2.7G bases, 860.9Mb
Run# of Spots# of BasesSizePublished
ERR104823068,899,4112.7G860.9Mb2022-11-23

ID:
25370987

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