U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX18411630: DNA sequencing of IMS1191
1 ILLUMINA (Illumina MiSeq) run: 4.8M spots, 730.9M bases, 273.9Mb downloads

Design: TruSeq DNA PCR-Free LT Library preparation
Submitted by: Delft University of Technology
Study: Arginine auxotrophy by deletion of the mitochondrial selectable marker ARG8 in Saccharomyces cerevisiae can be reverted by loss-of-function mutations in UME6
show Abstracthide Abstract
Mitochondria are essential organelles due to their role in oxidative phosphorylation and biosynthesis of essential molecules. Saccharomyces cerevisiae is a popular model organism for studying mitochondrial biology, as the robustness of S. cerevisiae to mitochondrial mutations makes it one of the few organisms in which mitochondrial DNA can be edited. Engineering of mitochondrial DNA requires mitochondrial selectable marker genes, such as the widely used ARG8 gene, encoding acetylornithine aminotransferase, which catalyzes an essential step in the arginine biosynthesis.In this study, ARG8 as well as ARG2 was deleted in S. cerevisiae, to investigate their potential as mitochondrial markers. It was found that upon deletion of ARG2 cells are still able to produce a limited amount of biomass and can bypass the deletion when uracil is provided. Additionally, arginine auxotrophy of an arg8 mutant was frequently reverted, resulting in arginine prototrophy and loss of respiration. The phenotype was caused by a mutation in UME6, causing de-repression of the CAR2 gene, providing the cells with an alternative route for arginine biosynthesis. Deletion of both ARG8 and CAR2 resulted in a fully arginine auxotrophic strain which can be used for mitochondrial targeting- and expression studies using the ARG8 marker.
Sample: Saccharomyces cerevisiae IMS1191
SAMN31925132 • SRS15894674 • All experiments • All runs
Library:
Name: IMS1191
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 4.8M spots, 730.9M bases, 273.9Mb
Run# of Spots# of BasesSizePublished
SRR224426304,840,010730.9M273.9Mb2023-12-01

ID:
25436024

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...