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SRX19025997: Genome sequence of Agrobacterium tumefaciens MAG: transgenic strain with integrated magnetosome gene cassette
1 ILLUMINA (Illumina NovaSeq 6000) run: 6.3M spots, 1.9G bases, 549.9Mb downloads

Design: Genomic DNA was extracted 2-10 mL of stationary cultures with the Zymo Research Midiprep gDNA kit (Zymo Research EUROPE GmbH, Germany). Library preparation and sequencing were performed at Novogene (UK) Co. Ltd using Illumina NovaSeq 6000 with paired-end 2 150bp reads corresponding to 1.0-1.3 Gbp in different samples.
Submitted by: University of Bayreuth
Study: Exploring the host range for genetic transfer of magnetic organelle biosynthesis
show Abstracthide Abstract
Magnetosomes produced by magnetotactic bacteria have great potential for application in biotechnology and medicine due to their unique physicochemical properties and high biocompatibility. Recent studies uncovered the genetic determinants for magnetosome formation and inspired ideas to transfer the pathway into hitherto non-magnetic organisms. However, previous efforts to genetically magnetize other species have been successful in only a few bacterial recipients, revealing significant challenges in this strategy. In our study, by systematic examination of 25 proteobacterial hosts, we generated 7 novel magnetosome-producing strains. We further characterize the recombinant magnetosomes produced by these strains and delineate a set of auxiliary factors linked to magnetosome formation. Here, we release the genome sequencing results of the transgenic strains with the successfully integrated magnetosome gene clusters.
Sample: Not able to synthesize magnetosomes upon the gene transfer
SAMN32723978 • SRS16444875 • All experiments • All runs
Library:
Name: 3
Instrument: Illumina NovaSeq 6000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 6.3M spots, 1.9G bases, 549.9Mb
Run# of Spots# of BasesSizePublished
SRR230728496,295,9891.9G549.9Mb2023-04-18

ID:
26186085

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