Whole genome shotgun sequencing of Shigella flexneri subsp. serovar 6... - SRA

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SRX884193: Whole genome shotgun sequencing of Shigella flexneri subsp. serovar 6 str. DMB SH20134 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 790,443 spots, 212.6M bases, 120.8Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration - CFSAN

PRJNA273284 • SRP055205 • All experiments • All runs

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Whole genome sequencing of cultured Shigella as part of FDA/CFSAN's surveillance project for rapid source tracking of foodborne illness outbreaks.

Sample:

SAMN03291495 • SRS851202 • All experiments • All runs

Organism: Shigella flexneri

Library:

Name: Shigella flexneri str. DMB SH20134 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Shigella flexneri subsp. serovar 6 str. DMB SH20134.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 790,443 spots, 212.6M bases, 120.8Mb

Run	# of Spots	# of Bases	Size	Published
SRR1811625	790,443	212.6M	120.8Mb	2015-02-20

ID:: 1268162

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