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SRX893488: Transcriptome of Agallia constricta: Sample Agcon - Agallia constricta
1 ILLUMINA (Illumina HiSeq 2500) run: 23.4M spots, 4.7G bases, 2.9Gb downloads

Design: "Construction of libraries and sequencing on the Illumina HiSeq2500 were performed at the W. M. Keck Center for Comparative and Functional Genomics at the University of Illinois at Urbana-Champaign. Messenger RNA was selected from one microgram of high quality total RNA. RNAseq libraries were constructed using the TruSeq Stranded RNA Sample Preparation Kit (Illumina, San Diego, CA). Libraries were sequenced on an Illumina HiSeq2500 with TruSeq SBS sequencing kits version 3. The libraries were sequenced from both ends of the molecules to a total read length of 100nt from each end. The raw .bcl files were converted into demultiplexed fastq files with Casava 1.8.2 (Illumina)."
Submitted by: (UIUC)
Study: The 1KITE project: evolution of insects
show Abstracthide Abstract
Insects are one of the most species-rich groups of metazoan organisms. They play a pivotal role in most non-marine ecosystems and many insect species are of enormous economical and medical importance. Unraveling the evolution of insects is essential for understanding how life in terrestrial and limnic environments evolved. The 1KITE (1K Insect Transcriptome Evolution) project aims to study the transcriptomes (that is the entirety of expressed genes) of 1,000 insect species encompassing all recognized insect orders. For each species, so-called ESTs (Expressed Sequence Tags) will be produced using next generation sequencing techniques (NGS). The expected data will allow inferring for the first time a robust phylogenetic backbone tree of insects. Furthermore, the project includes the development of new software for data quality assessment and analysis.
Sample: Generic sample from Agallia constricta
SAMN03341926 • SRS859708 • All experiments • All runs
Library:
Name: Agcon
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Spot descriptor:
forward101  reverse

Runs: 1 run, 23.4M spots, 4.7G bases, 2.9Gb
Run# of Spots# of BasesSizePublished
SRR182189423,389,4254.7G2.9Gb2018-11-29

ID:
1283911

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