Whole genome shotgun sequencing of Salmonella enterica subsp. serovar... - SRA

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SRX1045626: Whole genome shotgun sequencing of Salmonella enterica subsp. serovar paratyphi str. AZ_TG77311 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 678,271 spots, 321M bases, 178.7Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: Arizona State Public Health Laboratory

PRJNA183847 • SRP028894 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample:

SAMN03652561 • SRS950829 • All experiments • All runs

Organism: Salmonella enterica

Library:

Name: Salmonella enterica str. AZ_TG77311 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. serovar paratyphi str. AZ_TG77311.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 678,271 spots, 321M bases, 178.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR2047349	678,271	321M	178.7Mb	2015-06-02

ID:: 1516920

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