GSM1691841: WT_0.5_1; Pantoea stewartii subsp. stewartii; RNA-Seq - SRA

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SRX1033905: GSM1691841: WT_0.5_1; Pantoea stewartii subsp. stewartii; RNA-Seq
8 ILLUMINA (Illumina HiSeq 2500) runs: 25.7M spots, 1.3G bases, 749.3Mb downloads

Submitted by: Gene Expression Omnibus (GEO)

Study: Pantoea stewartii subsp. stewartii DC283 Transcriptome or Gene expression

PRJNA284356 • SRP063010 • All experiments • All runs

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Transcriptome analysis of Pantoea stewartii subsp stewartii DC283 Wild Type compared to 2 mutants

Sample: WT_0.5_1

SAMN03702300 • SRS941428 • All experiments • All runs

Organism: Pantoea stewartii subsp. stewartii

Library:

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: RNA isolation with Qiagen miRNeasy kit with on column Dnase I digestions. rRNA was delepted using Epicentre Gram negative rRNA depeletion kit. RNA libraries were prepared for sequencing using standard Illumina protocols at Virginia Bioinformatic Institute

Links:

NCBI link: NCBI Entrez (gds)

Runs: 8 runs, 25.7M spots, 1.3G bases, 749.3Mb

Run	# of Spots	# of Bases	Size	Published
SRR2033667	4,000,000	200M	116.4Mb	2016-04-27
SRR2033668	4,000,000	200M	116.1Mb	2016-04-27
SRR2033669	4,000,000	200M	116.9Mb	2016-04-27
SRR2033670	938,876	46.9M	28.7Mb	2016-04-27
SRR2033671	4,000,000	200M	115.5Mb	2016-04-27
SRR2033672	4,000,000	200M	116.1Mb	2016-04-27
SRR2033673	4,000,000	200M	116.5Mb	2016-04-27
SRR2033674	754,075	37.7M	23.2Mb	2016-04-27

ID:: 1497464

SRA

Sequence Read Archive

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