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SRX1424784: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Dublin by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 807,234 spots, 360.9M bases, 208Mb downloads

External Id: EXT00146972
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: CFSAN
Study: GenomeTrakr Project: SDSU Veterinary & Biomedical Sciences/ DOH South Dakota
PRJNA280335 • SRP059853 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured Salmonella enterica as part of the US Food and Drug Administration's WGS surveillance effort for the rapid detection of foodborne illness outbreaks.
Sample:
SAMN03734334 • SRS1157080 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Dublin
Library:
Name: Salmonella enterica subsp. enterica serovar Dublin Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Dublin.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 807,234 spots, 360.9M bases, 208Mb
Run# of Spots# of BasesSizePublished
SRR2911775807,234360.9M208Mb2015-11-09

ID:
2016398

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