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SRX1051849: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Newport str. AZ-TG77763 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1M spots, 486.1M bases, 289.6Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr Project: Arizona State Public Health Laboratory
PRJNA183847 • SRP028894 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN03754530 • SRS955986 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Newport
Library:
Name: Salmonella enterica str. AZ-TG77763 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Newport str. AZ-TG77763.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.54
Runs: 1 run, 1M spots, 486.1M bases, 289.6Mb
Run# of Spots# of BasesSizePublished
SRR20543791,010,517486.1M289.6Mb2015-06-06

ID:
1527081

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