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SRX21900659: Shotgun seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 10.7M spots, 3.2G bases, 1Gb downloads

Design: Nextera DNA Flex kit (Illumina, San Diego, CA) has been used for library preparation following themanufacturers instructions. Both input and final libraries were quantified by Qubit 2.0 Fluorometer(Invitrogen, Carlsbad, CA) and quality tested by Agilent 2100 Bioanalyzer High Sensitivity DNA assay(Agilent technologies, Santa Clara, CA).Libraries were then prepared for sequencing and sequenced on NovaSeq 6000 in paired-end 150mode.
Submitted by: CNR
Study: Bacterial communities and related resistomes on microplastic and other organic particles of natural origin are similar to each other but differ from those free-living in the waters of the Tyrrhenian Sea
show Abstracthide Abstract
In this study, we sampled the Tyrrhenian Sea, selecting two coastal sites, with a different degree of anthropogenic pollution, and a pelagic site to assess the current coastal influence on open water. At each site, we collected water samples and isolated, quantified, and identified microplastic particles (MPs), as well as natural organic particles (NOPs). We analyzed the planktonic bacterial community and assessed the biofilms developed on both MPs and NOPs by shotgun metagenomics. Using the same approach, we characterized the antimicrobial resistome (total content of antimicrobial resistant genes, ARGs) of the planktonic community and within the sessile community of MPs and NOPs. Additionally, we reconstructed metagenome-assembled genomes from water, MPs, and NOPs, unveiling the potential hosts for the ARGs.
Sample:
SAMN37555909 • SRS18987664 • All experiments • All runs
Organism: metagenome
Library:
Name: 14_NOPs_FdM
Instrument: Illumina NovaSeq 6000
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM PCR
Layout: PAIRED
Runs: 1 run, 10.7M spots, 3.2G bases, 1Gb
Run# of Spots# of BasesSizePublished
SRR2618889610,664,1943.2G1Gb2024-05-14

ID:
29795839

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