Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

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SRX1126179: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica str. ADRDL-LA-10-2014 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 843,627 spots, 392.8M bases, 251.1Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: SDSU Veterinary & Biomedical Sciences/ DOH South Dakota

PRJNA280335 • SRP059853 • All experiments • All runs

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Whole genome sequencing of cultured Salmonella enterica as part of the US Food and Drug Administration's WGS surveillance effort for the rapid detection of foodborne illness outbreaks.

Sample:

SAMN03780270 • SRS1018103 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica

Library:

Name: Salmonella enterica str. ADRDL-LA-10-2014 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica str. ADRDL-LA-10-2014.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 843,627 spots, 392.8M bases, 251.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR2136809	843,627	392.8M	251.1Mb	2015-07-31

ID:: 1642529

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